3SC8 Dna date Jun 07, 2011
title Crystal Structure Of An Intramolecular Human Telomeric Dna G Quadruplex Bound By The Naphthalene Diimide Bmsg-Sh-3
authors G.W.Collie, R.Promontorio, G.N.Parkinson
compound source
Molecule: Human Telomeric Repeat Sequence
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Dna Sequence Synthesized By Standard By Phosphoramidite Chemistry
symmetry Space Group: P 31 2 1
R_factor 0.258 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.870 50.870 52.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand K, R8G enzyme
Primary referenceStructural basis for telomeric g-quadruplex targeting by naphthalene diimide ligands., Collie GW, Promontorio R, Hampel SM, Micco M, Neidle S, Parkinson GN, J Am Chem Soc. 2012 Feb 8;134(5):2723-31. Epub 2012 Jan 31. PMID:22280460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3sc8.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3SC8
  • CSU: Contacts of Structural Units for 3SC8
  • Structure Factors (51 Kb)
  • Retrieve 3SC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SC8 from S2C, [Save to disk]
  • Re-refined 3sc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SC8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SC8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sc8] [3sc8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3SC8
  • Community annotation for 3SC8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
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