3SF8 Oncoprotein,Unknown Function date Jun 13, 2011
title Structural Insights Into Thiol Stabilization Of Dj-1
authors L.Premkumar, M.K.Dobaczewska, S.J.Riedl
compound source
Molecule: Protein Dj-1
Chain: A
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Ec: 3.4.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Dj-1
Chain: B
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Ec: 3.4.-.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.880 41.831 63.344 90.00 115.79 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand CSO enzyme Hydrolase E.C.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of prote...

  • Primary referenceIdentification of an artificial peptide motif that binds and stabilizes reduced human DJ-1., Premkumar L, Dobaczewska MK, Riedl SJ, J Struct Biol. 2011 Aug 27. PMID:21893204
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (3sf8.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3SF8
  • CSU: Contacts of Structural Units for 3SF8
  • Structure Factors (2588 Kb)
  • Retrieve 3SF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SF8 from S2C, [Save to disk]
  • Re-refined 3sf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 3SF8
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SF8, from MSDmotif at EBI
  • Fold representative 3sf8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sf8_B] [3sf8] [3sf8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SF8
  • Community annotation for 3SF8 at PDBWiki (http://pdbwiki.org)
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