3SF8 Oncoprotein,Unknown Function date Jun 13, 2011
title Structural Insights Into Thiol Stabilization Of Dj-1
authors L.Premkumar, M.K.Dobaczewska, S.J.Riedl
compound source
Molecule: Protein Dj-1
Chain: A
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Ec: 3.4.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Dj-1
Chain: B
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Ec: 3.4.-.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.880 41.831 63.344 90.00 115.79 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand CSO enzyme Hydrolase E.C.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of an artificial peptide motif that binds and stabilizes reduced human DJ-1., Premkumar L, Dobaczewska MK, Riedl SJ, J Struct Biol. 2011 Aug 27. PMID:21893204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (3sf8.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3SF8
  • CSU: Contacts of Structural Units for 3SF8
  • Structure Factors (2588 Kb)
  • Retrieve 3SF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SF8 from S2C, [Save to disk]
  • Re-refined 3sf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SF8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SF8, from MSDmotif at EBI
  • Fold representative 3sf8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sf8_B] [3sf8] [3sf8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3SF8 with the sequences similar proteins can be viewed for 3SF8's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3SF8
  • Community annotation for 3SF8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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