3SGK Immune System date Jun 15, 2011
title Unique Carbohydratecarbohydrate Interactions Are Required F Affinity Binding Of Fcgiii And Antibodies Lacking Core Fuco
authors C.Ferrara, S.Grau, C.Jaeger, P.Sondermann, P.Bruenker, I.Waldhaue M.Hennig, A.Ruf, A.C.Rufer, M.Stihle, P.Umana, J.Benz
compound source
Molecule: Fc Fragment
Chain: A, B
Fragment: Unp Residues 106-330
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ighg1
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029

Molecule: Human Fcg3a Receptor
Chain: C
Fragment: Unp Residues 19-208
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fcgr3a, Cd16a, Fcg3, Fcgr3, Igfr3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.343 88.227 141.133 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BMA, MAN, MLI, NAG enzyme
Primary referenceUnique carbohydrate-carbohydrate interactions are required for high affinity binding between Fc{gamma}RIII and antibodies lacking core fucose., Ferrara C, Grau S, Jager C, Sondermann P, Brunker P, Waldhauer I, Hennig M, Ruf A, Rufer AC, Stihle M, Umana P, Benz J, Proc Natl Acad Sci U S A. 2011 Jul 18. PMID:21768335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (3sgk.pdb1.gz) 204 Kb
  • Biological Unit Coordinates (3sgk.pdb2.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 3SGK
  • CSU: Contacts of Structural Units for 3SGK
  • Structure Factors (506 Kb)
  • Retrieve 3SGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SGK from S2C, [Save to disk]
  • Re-refined 3sgk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SGK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SGK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sgk] [3sgk_C] [3sgk_A] [3sgk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3SGK: [IG] [IG_like] [IGc1 ] by SMART
  • Other resources with information on 3SGK
  • Community annotation for 3SGK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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