3SHV Cell Cycle date Jun 17, 2011
title Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma H Complex
authors Z.H.Shao, F.D.Li, W.Yan
compound source
Molecule: Microcephalin
Chain: A, B
Fragment: Residues 639-835
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcph1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Histone H2a.X
Chain: C, D
Fragment: Residues In Unp 134-143
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
symmetry Space Group: P 21 21 2
R_factor 0.197 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.772 132.860 31.534 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand SEP enzyme
Primary referenceSpecific recognition of phosphorylated tail of H2AX by the tandem BRCT domains of MCPH1 revealed by complex structure., Shao Z, Li F, Sy SM, Yan W, Zhang Z, Gong D, Wen B, Huen MS, Gong Q, Wu J, Shi Y, J Struct Biol. 2011 Dec 1. PMID:22154951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3shv.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (3shv.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3SHV
  • CSU: Contacts of Structural Units for 3SHV
  • Structure Factors (467 Kb)
  • Retrieve 3SHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SHV from S2C, [Save to disk]
  • Re-refined 3shv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SHV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SHV, from MSDmotif at EBI
  • Fold representative 3shv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3shv] [3shv_C] [3shv_D] [3shv_A] [3shv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SHV: [BRCT ] by SMART
  • Other resources with information on 3SHV
  • Community annotation for 3SHV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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