3SMJ Transferase Transferase Inhibitor date Jun 28, 2011
title Human Poly(Adp-Ribose) Polymerase 14 (Parp14artd8) - Cataly In Complex With A Pyrimidine-Like Inhibitor
authors T.Karlberg, M.Moche, C.H.Arrowsmith, H.Berglund, C.Bountra, A.M.E T.Ekblad, S.Graslund, E.Kouznetsova, P.Nordlund, T.Nyman, A.G.Th L.Tresaugues, J.Weigelt, H.Schuler, Structural Genomics Consor (Sgc)
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A, B
Fragment: Catalytic Domain
Synonym: Parp-14, B Aggressive Lymphoma Protein 2
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal2, Kiaa1268, Parp14
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.473 67.755 144.803 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand FDR, GOL enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFamily-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors., Wahlberg E, Karlberg T, Kouznetsova E, Markova N, Macchiarulo A, Thorsell AG, Pol E, Frostell A, Ekblad T, Oncu D, Kull B, Robertson GM, Pellicciari R, Schuler H, Weigelt J, Nat Biotechnol. 2012 Feb 19. doi: 10.1038/nbt.2121. PMID:22343925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3smj.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3smj.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (3smj.pdb3.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3SMJ
  • CSU: Contacts of Structural Units for 3SMJ
  • Structure Factors (433 Kb)
  • Retrieve 3SMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SMJ from S2C, [Save to disk]
  • Re-refined 3smj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SMJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SMJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3smj_A] [3smj_B] [3smj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SMJ
  • Community annotation for 3SMJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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