3SO8 Protein Binding date Jun 30, 2011
title Crystal Structure Of Ankra
authors C.Xu, A.Bochkarev, C.B.Bian, J.Min, Structural Genomics Consorti
compound source
Molecule: Ankyrin Repeat Family A Protein 2
Chain: A
Fragment: Unp Residues 149-310
Synonym: Rfxank-Like Protein 2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ankra2, Ankra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.147 40.776 99.061 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Primary referenceSequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock., Xu C, Jin J, Bian C, Lam R, Tian R, Weist R, You L, Nie J, Bochkarev A, Tempel W, Tan CS, Wasney GA, Vedadi M, Gish GD, Arrowsmith CH, Pawson T, Yang XJ, Min J, Sci Signal. 2012 May 29;5(226):ra39. PMID:22649097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3so8.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 3SO8
  • Structure Factors (189 Kb)
  • Retrieve 3SO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SO8 from S2C, [Save to disk]
  • Re-refined 3so8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SO8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SO8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3so8] [3so8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SO8: [ANK ] by SMART
    • Other resources with information on 3SO8
  • Community annotation for 3SO8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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