3SQJ Transport Protein date Jul 05, 2011
title Recombinant Human Serum Albumin From Transgenic Plant
authors Y.He, D.Yang
compound source
Molecule: Serum Albumin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb, Gig20, Gig42, Hsa, Pro0903, Pro1708, Pro2044, Pr Pro2675, Unq696pro1341;
Expression_system: Oryza Sativa
Expression_system_taxid: 4530
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.610 38.368 184.037 90.00 104.93 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLarge-scale production of functional human serum albumin from transgenic rice seeds., He Y, Ning T, Xie T, Qiu Q, Zhang L, Sun Y, Jiang D, Fu K, Yin F, Zhang W, Shen L, Wang H, Li J, Lin Q, Sun Y, Li H, Zhu Y, Yang D, Proc Natl Acad Sci U S A. 2011 Oct 31. PMID:22042856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (3sqj.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (3sqj.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3SQJ
  • CSU: Contacts of Structural Units for 3SQJ
  • Structure Factors (1250 Kb)
  • Retrieve 3SQJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SQJ from S2C, [Save to disk]
  • Re-refined 3sqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SQJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SQJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SQJ, from MSDmotif at EBI
  • Fold representative 3sqj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sqj_B] [3sqj_A] [3sqj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SQJ: [ALBUMIN ] by SMART
  • Alignments of the sequence of 3SQJ with the sequences similar proteins can be viewed for 3SQJ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3SQJ
  • Community annotation for 3SQJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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