3SRD Transferase date Jul 07, 2011
title Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bispho Oxalate.
authors H.P.Morgan, F.O'Reilly, R.Palmer, I.W.Mcnae, M.W.Nowicki, M.A.Wea L.A.Fothergill-Gilmore, M.D.Walkinshaw
compound source
Molecule: Pyruvate Kinase Isozymes M1m2
Chain: A, B, C, D
Synonym: Cytosolic Thyroid Hormone-Binding Protein, Cthbp, Interacting Protein 3, Oip-3, Pyruvate Kinase 23, Pyruvate Muscle Isozyme, Thyroid Hormone-Binding Protein 1, Thbp1, T Pk, P58;
Ec: 2.7.1.40
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oip3, Pk2, Pk3, Pkm, Pkm2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet28a_m2
symmetry Space Group: P 1 21 1
R_factor 0.253 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.050 117.370 110.460 90.00 113.56 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand FBP, GOL, K, MG, OXL enzyme Transferase E.C.2.7.1.40 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (668 Kb) [Save to disk]
  • Biological Unit Coordinates (3srd.pdb1.gz) 655 Kb
  • LPC: Ligand-Protein Contacts for 3SRD
  • CSU: Contacts of Structural Units for 3SRD
  • Structure Factors (694 Kb)
  • Retrieve 3SRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SRD from S2C, [Save to disk]
  • Re-refined 3srd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SRD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SRD, from MSDmotif at EBI
  • Fold representative 3srd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3srd_C] [3srd_B] [3srd_D] [3srd_A] [3srd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SRD
  • Community annotation for 3SRD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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