3SRF Transferase date Jul 07, 2011
title Human M1 Pyruvate Kinase
authors H.P.Morgan, F.O'Reilly, R.Palmer, I.W.Mcnae, M.W.Nowicki, M.A.Wea L.A.Fothergill-Gilmore, M.D.Walkinshaw
compound source
Molecule: Pyruvate Kinase Isozymes M1m2
Chain: C, A, B, D, E, F, G, H
Synonym: Cytosolic Thyroid Hormone-Binding Protein, Cthbp, Interacting Protein 3, Oip-3, Pyruvate Kinase 23, Pyruvate Muscle Isozyme, Thyroid Hormone-Binding Protein 1, Thbp1, T Pk, P58;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oip3, Pk2, Pk3, Pkm, Pkm1, Pkm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet28a_m2
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.280
length a length b length c angle alpha angle beta angle gamma
238.003 192.222 109.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand GOL, K, MG, PO4, PYR enzyme Transferase E.C. BRENDA
F, A, E, B, H, C, D, G

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (647 Kb) [Save to disk]
  • Biological Unit Coordinates (3srf.pdb1.gz) 322 Kb
  • Biological Unit Coordinates (3srf.pdb2.gz) 324 Kb
  • Biological Unit Coordinates (3srf.pdb3.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 3SRF
  • CSU: Contacts of Structural Units for 3SRF
  • Structure Factors (1766 Kb)
  • Retrieve 3SRF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SRF from S2C, [Save to disk]
  • Re-refined 3srf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SRF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SRF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SRF, from MSDmotif at EBI
  • Fold representative 3srf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3srf_B] [3srf] [3srf_C] [3srf_G] [3srf_H] [3srf_F] [3srf_A] [3srf_E] [3srf_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SRF
  • Community annotation for 3SRF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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