3SU6 Hydrolase Inhibitor date Jul 11, 2011
title Crystal Structure Of Ns34a Protease Variant A156t In Comple Vaniprevir
authors C.A.Schiffer, K.P.Romano
compound source
Molecule: Ns3 Protease, Ns4a Protein
Chain: A
Fragment: Ns4a (Unp Residues 1674-1688), Ns3 (Unp Residues 1208);
Engineered: Yes
Mutation: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 31646
Strain: Subtype 1a, Bid-V318
Gene: Ns3-Ns4a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.150 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.981 58.451 59.829 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand GOL, SO4, SU3, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Molecular Basis of Drug Resistance against Hepatitis C Virus NS3/4A Protease Inhibitors., Romano KP, Ali A, Aydin C, Soumana D, Ozen A, Deveau LM, Silver C, Cao H, Newton A, Petropoulos CJ, Huang W, Schiffer CA, PLoS Pathog. 2012 Jul;8(7):e1002832. Epub 2012 Jul 26. PMID:22910833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3su6.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3SU6
  • CSU: Contacts of Structural Units for 3SU6
  • Structure Factors (1682 Kb)
  • Retrieve 3SU6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SU6 from S2C, [Save to disk]
  • Re-refined 3su6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SU6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SU6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SU6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3su6] [3su6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SU6
  • Community annotation for 3SU6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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