3SUO Transferase Dna date Jul 11, 2011
title Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp Opposi Rich Sequence)
authors S.Xia, W.H.Konigsberg, J.Wang
compound source
Molecule: Dna Polymerase
Chain: A
Synonym: Gp43
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacteria Phage Rb69
Organism_taxid: 12353
Gene: 43
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Pcp(2pr)Ptpcpgpcpcpgpcpcpgpcpgp 3';
Chain: T
Engineered: Yes
Other_details: Template

Synthetic: Yes

Molecule: 5'-D(Cpgpcpgpcpgpgpcpgpgpcpgp(2da))-
Chain: P
Engineered: Yes
Other_details: Primer

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
74.401 120.073 130.885 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand 2DA, 2PR, CA, TTP enzyme Transferase E.C. BRENDA
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity

  • Primary referenceStructure of the 2-Aminopurine-Cytosine Base Pair Formed in the Polymerase Active Site of the RB69 Y567A-DNA Polymerase., Reha-Krantz LJ, Hariharan C, Subuddhi U, Xia S, Zhao C, Beckman J, Christian T, Konigsberg W, Biochemistry. 2011 Nov 22;50(46):10136-49. Epub 2011 Oct 28. PMID:22023103
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (3suo.pdb1.gz) 332 Kb
  • LPC: Ligand-Protein Contacts for 3SUO
  • CSU: Contacts of Structural Units for 3SUO
  • Structure Factors (630 Kb)
  • Retrieve 3SUO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SUO from S2C, [Save to disk]
  • Re-refined 3suo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SUO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SUO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SUO, from MSDmotif at EBI
  • Fold representative 3suo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3suo] [3suo_P] [3suo_T] [3suo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SUO: [POLBc ] by SMART
  • Other resources with information on 3SUO
  • Community annotation for 3SUO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science