3SWR Transferase date Jul 14, 2011
title Structure Of Human Dnmt1 (601-1600) In Complex With Sinefung
authors H.Hashimoto, X.Cheng
compound source
Molecule: Dna (Cytosine-5)-Methyltransferase 1
Chain: A
Fragment: Sequence Database Residues 601-1600
Synonym: Dnmt1, Cxxc-Type Zinc Finger Protein 9, Dna Methyltransferase Hsai, Dna Mtase Hsai, M.Hsai, Mcmt;
Ec: 2.1.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnmt1, Aim, Cxxc9, Dnmt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxc916
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.000 110.770 201.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand EDO, MES, SFG, SO4, ZN enzyme Transferase E.C.2.1.1.37 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (3swr.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 3SWR
  • CSU: Contacts of Structural Units for 3SWR
  • Structure Factors (572 Kb)
  • Retrieve 3SWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SWR from S2C, [Save to disk]
  • Re-refined 3swr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SWR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SWR, from MSDmotif at EBI
  • Fold representative 3swr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3swr] [3swr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SWR: [BAH ] by SMART
  • Alignments of the sequence of 3SWR with the sequences similar proteins can be viewed for 3SWR's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3SWR
  • Community annotation for 3SWR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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