3SWR Transferase date Jul 14, 2011
title Structure Of Human Dnmt1 (601-1600) In Complex With Sinefung
authors H.Hashimoto, X.Cheng
compound source
Molecule: Dna (Cytosine-5)-Methyltransferase 1
Chain: A
Fragment: Sequence Database Residues 601-1600
Synonym: Dnmt1, Cxxc-Type Zinc Finger Protein 9, Dna Methyltransferase Hsai, Dna Mtase Hsai, M.Hsai, Mcmt;
Ec: 2.1.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnmt1, Aim, Cxxc9, Dnmt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxc916
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.000 110.770 201.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand EDO, MES, SFG, SO4, ZN enzyme Transferase E.C.2.1.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (3swr.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 3SWR
  • CSU: Contacts of Structural Units for 3SWR
  • Structure Factors (572 Kb)
  • Retrieve 3SWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SWR from S2C, [Save to disk]
  • Re-refined 3swr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SWR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SWR, from MSDmotif at EBI
  • Fold representative 3swr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3swr] [3swr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SWR: [BAH ] by SMART
  • Other resources with information on 3SWR
  • Community annotation for 3SWR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science