3SWV Metal Binding Protein date Jul 14, 2011
title Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guani Nucleotide-Exchange Protein 2 (Brefeldin A-Inhibited Gep 2) Sapiens (Human), Northeast Structural Genomics Consortium T Hr5562a
authors J.Seetharaman, M.Su, F.Forouhar, D.Wang, H.Janjua, K.Cunningham, L R.Xiao, J.Liu, M.C.Baran, T.B.Acton, G.T.Montelione, J.F.Hunt, L. Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Brefeldin A-Inhibited Guanine Nucleotide-Exchange 2;
Chain: A
Fragment: Sec7 Domain Residues 635-836
Synonym: Brefeldin A-Inhibited Gep 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arfgef2, Arfgep2, Big2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.203 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.939 53.939 75.725 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3swv.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3SWV
  • CSU: Contacts of Structural Units for 3SWV
  • Structure Factors (135 Kb)
  • Retrieve 3SWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SWV from S2C, [Save to disk]
  • Re-refined 3swv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SWV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SWV, from MSDmotif at EBI
  • Fold representative 3swv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3swv_A] [3swv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SWV: [Sec7 ] by SMART
  • Other resources with information on 3SWV
  • Community annotation for 3SWV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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