OCA Atlas for 3SYN

3SYN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AF3, GDP, MG, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A, C, D

Primary reference

Structural basis for the molecular evolution of SRP-GTPase activation by protein., Bange G, Kummerer N, Grudnik P, Lindner R, Petzold G, Kressler D, Hurt E, Wild K, Sinning I, Nat Struct Mol Biol. 2011 Nov 6;18(12):1376-80. doi: 10.1038/nsmb.2141. PMID:22056770

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]

Biological Unit Coordinates (3syn.pdb1.gz) 48 Kb

Biological Unit Coordinates (3syn.pdb2.gz) 48 Kb

Biological Unit Coordinates (3syn.pdb3.gz) 48 Kb

Biological Unit Coordinates (3syn.pdb4.gz) 48 Kb

Biological Unit Coordinates (3syn.pdb5.gz) 180 Kb

LPC: Ligand-Protein Contacts for 3SYN

CSU: Contacts of Structural Units for 3SYN

Structure Factors (489 Kb)

Retrieve 3SYN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3SYN from S2C, [Save to disk]

Re-refined 3syn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SYN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3syn] [3syn_A] [3syn_B] [3syn_C] [3syn_D] [3syn_E] [3syn_F] [3syn_G] [3syn_H]

SWISS-PROT database:

Domain found in 3SYN: [SRP54 ] by SMART

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