3SYX Signaling Protein date Jul 18, 2011
title Crystal Structure Of The Wh1 Domain From Human Sprouty-Relat Domain-Containing Protein. Northeast Structural Genomics Co Target Hr5538b.
authors S.Vorobiev, M.Su, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, R J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Sprouty-Related, Evh1 Domain-Containing Protein 1
Chain: A
Fragment: Wh1 Domain
Synonym: Spred-1, Hspred1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spred1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) +Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 14-15c, Hr5538b-13-131-14.6
symmetry Space Group: P 31 1 2
R_factor 0.228 R_Free 0.271
length a length b length c angle alpha angle beta angle gamma
52.754 52.754 121.638 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.45 Å
ligand YT3 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3syx.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3SYX
  • CSU: Contacts of Structural Units for 3SYX
  • Structure Factors (295 Kb)
  • Retrieve 3SYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SYX from S2C, [Save to disk]
  • Re-refined 3syx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SYX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SYX, from MSDmotif at EBI
  • Fold representative 3syx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3syx_A] [3syx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SYX: [WH1 ] by SMART
  • Other resources with information on 3SYX
  • Community annotation for 3SYX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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