3SYX Signaling Protein date Jul 18, 2011
title Crystal Structure Of The Wh1 Domain From Human Sprouty-Relat Domain-Containing Protein. Northeast Structural Genomics Co Target Hr5538b.
authors S.Vorobiev, M.Su, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, R J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Sprouty-Related, Evh1 Domain-Containing Protein 1
Chain: A
Fragment: Wh1 Domain
Synonym: Spred-1, Hspred1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spred1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) +Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 14-15c, Hr5538b-13-131-14.6
symmetry Space Group: P 31 1 2
R_factor 0.228 R_Free 0.271
length a length b length c angle alpha angle beta angle gamma
52.754 52.754 121.638 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.45 Å
ligand YT3 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3syx.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3SYX
  • CSU: Contacts of Structural Units for 3SYX
  • Structure Factors (295 Kb)
  • Retrieve 3SYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SYX from S2C, [Save to disk]
  • Re-refined 3syx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SYX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SYX, from MSDmotif at EBI
  • Fold representative 3syx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3syx_A] [3syx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3SYX with the sequences similar proteins can be viewed for 3SYX's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3SYX
  • Community annotation for 3SYX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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