3SZ9 Oxidoreductase Oxidoreductase Inhibitor date Jul 18, 2011
title Crystal Structure Of Human Aldh2 Modified With The Beta-Elim Product Of Aldi-3; 1-(4-Ethylbenzene)Prop-2-En-1-One
authors S.Perez-Miller, T.D.Hurley
compound source
Molecule: Aldehyde Dehydrogenase, Mitochondrial
Chain: A, B, C, D, E, F, G, H
Fragment: Mature Sequence, Unp Residues 18-517
Synonym: Aldh Class 2, Aldh-E2, Aldhi
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh2, Aldm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt-7-7
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
140.522 151.052 177.021 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO, GAI, I3E, NA enzyme Oxidoreductase E.C. BRENDA
F, A, E, B, H, C, D, G
  • electron transfer activity

  • Primary referenceDiscovery of a novel class of covalent inhibitor for aldehyde dehydrogenases., Khanna M, Chen CH, Kimble-Hill A, Parajuli B, Perez-Miller S, Baskaran S, Kim J, Dria K, Vasiliou V, Mochly-Rosen D, Hurley TD, J Biol Chem. 2011 Oct 21. PMID:22021038
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (676 Kb) [Save to disk]
  • Biological Unit Coordinates (3sz9.pdb1.gz) 173 Kb
  • Biological Unit Coordinates (3sz9.pdb2.gz) 174 Kb
  • Biological Unit Coordinates (3sz9.pdb3.gz) 177 Kb
  • Biological Unit Coordinates (3sz9.pdb4.gz) 174 Kb
  • Biological Unit Coordinates (3sz9.pdb5.gz) 337 Kb
  • Biological Unit Coordinates (3sz9.pdb6.gz) 341 Kb
  • LPC: Ligand-Protein Contacts for 3SZ9
  • CSU: Contacts of Structural Units for 3SZ9
  • Structure Factors (4066 Kb)
  • Retrieve 3SZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SZ9 from S2C, [Save to disk]
  • Re-refined 3sz9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SZ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SZ9, from MSDmotif at EBI
  • Fold representative 3sz9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sz9_A] [3sz9_D] [3sz9_C] [3sz9_F] [3sz9_G] [3sz9_E] [3sz9_B] [3sz9] [3sz9_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SZ9
  • Community annotation for 3SZ9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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