3SZQ Structure of an S. pombe APTX/DNA/AMP/Zn complex date
authors Tumbale, P., Krahn, J., Williams, R.S.
compound source
R_Free 0.2110
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand AMP, BME, ZN enzyme
Primary referenceStructure of an aprataxin-DNA complex with insights into AOA1 neurodegenerative disease., Tumbale P, Appel CD, Kraehenbuehl R, Robertson PD, Williams JS, Krahn J, Ahel I, Williams RS, Nat Struct Mol Biol. 2011 Oct 9;18(11):1189-95. doi: 10.1038/nsmb.2146. PMID:21984210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3szq.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3SZQ
  • CSU: Contacts of Structural Units for 3SZQ
  • Structure Factors (193 Kb)
  • Retrieve 3SZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SZQ from S2C, [Save to disk]
  • Re-refined 3szq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SZQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SZQ, from MSDmotif at EBI
  • Fold representative 3szq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3szq] [3szq_A] [3szq_C] [3szq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SZQ
  • Community annotation for 3SZQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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