3T06 Signaling Protein date Jul 19, 2011
title Crystal Structure Of The Dhph Fragment Of Pdzrhogef With N- Regulatory Elements In Complex With Human Rhoa
authors J.A.Bielnicki, U.Derewenda, Z.S.Derewenda
compound source
Molecule: Rho Guanine Nucleotide Exchange Factor 11
Chain: A, E
Synonym: Pdz-Rhogef
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgef11, Kiaa0380
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15

Molecule: Transforming Protein Rhoa
Chain: B, F
Synonym: Rho Cdna Clone 12, H12
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arh12, Arha, Rho12, Rhoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.370 118.630 92.443 90.00 113.61 90.00
method X-Ray Diffractionresolution 2.84 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


Bg, Sa


F, B


Primary referenceInsights into the molecular activation mechanism of the RhoA-specific guanine nucleotide exchange factor, PDZRhoGEF., Bielnicki JA, Shkumatov A, Derewenda U, Somlyo AV, Svergun DI, Derewenda ZS, J Biol Chem. 2011 Aug 4. PMID:21816819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (3t06.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (3t06.pdb2.gz) 89 Kb
  • CSU: Contacts of Structural Units for 3T06
  • Structure Factors (950 Kb)
  • Retrieve 3T06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T06 from S2C, [Save to disk]
  • Re-refined 3t06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T06, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t06] [3t06_B] [3t06_A] [3t06_F] [3t06_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3T06: [PH] [RHO] [RhoGEF ] by SMART
  • Other resources with information on 3T06
  • Community annotation for 3T06 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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