3T0Z	Chaperone	date	Jul 21, 2011
title	Hsp90 N-Terminal Domain Bound To Atp
authors	J.Li
compound		source
Molecule: Heat Shock Protein Hsp 90-Alpha Chain: A Fragment: Unp Residues 9-236 Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hsp90a, Hsp90aa1, Hspc1, Hspca Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.709 46.780 53.223 90.00 111.59 90.00
method	X-Ray Diffraction	resolution	2.19 Å
ligand	ATP, MG	enzyme
Primary reference	Structure insights into mechanisms of ATP hydrolysis and the activation of human heat-shock protein 90., Li J, Sun L, Xu C, Yu F, Zhou H, Zhao Y, Zhang J, Cai J, Mao C, Tang L, Xu Y, He J, Acta Biochim Biophys Sin (Shanghai). 2012 Apr;44(4):300-6. doi:, 10.1093/abbs/gms001. Epub 2012 Feb 7. PMID:22318716

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (3t0z.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 3T0Z CSU: Contacts of Structural Units for 3T0Z Structure Factors (106 Kb) Retrieve 3T0Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3T0Z from S2C, [Save to disk] Re-refined 3t0z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T0Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3T0Z

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3T0Z, from MSDmotif at EBI Fold representative 3t0z from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t0z_A] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3T0Z with the sequences similar proteins can be viewed for 3T0Z's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3T0Z

Community annotation for 3T0Z at PDBWiki (http://pdbwiki.org)

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