3T10 Chaperone date Jul 21, 2011
title Hsp90 N-Terminal Domain Bound To Acp
authors J.Li
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: Unp Residues 9-236
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90a, Hsp90aa1, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.158 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.170 44.972 53.854 90.00 115.15 90.00
method X-Ray Diffractionresolution 1.24 Å
ligand ACP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure insights into mechanisms of ATP hydrolysis and the activation of human heat-shock protein 90., Li J, Sun L, Xu C, Yu F, Zhou H, Zhao Y, Zhang J, Cai J, Mao C, Tang L, Xu Y, He J, Acta Biochim Biophys Sin (Shanghai). 2012 Apr;44(4):300-6. doi:, 10.1093/abbs/gms001. Epub 2012 Feb 7. PMID:22318716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (3t10.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3T10
  • CSU: Contacts of Structural Units for 3T10
  • Structure Factors (712 Kb)
  • Retrieve 3T10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T10 from S2C, [Save to disk]
  • Re-refined 3t10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T10, from MSDmotif at EBI
  • Fold representative 3t10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t10_A] [3t10]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3T10 with the sequences similar proteins can be viewed for 3T10's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3T10
  • Community annotation for 3T10 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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