3T10	Chaperone	date	Jul 21, 2011
title	Hsp90 N-Terminal Domain Bound To Acp
authors	J.Li
compound		source
Molecule: Heat Shock Protein Hsp 90-Alpha Chain: A Fragment: Unp Residues 9-236 Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hsp90a, Hsp90aa1, Hspc1, Hspca Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.158 R_Free 0.172
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.170 44.972 53.854 90.00 115.15 90.00
method	X-Ray Diffraction	resolution	1.24 Å
ligand	ACP, MG	enzyme
Primary reference	Structure insights into mechanisms of ATP hydrolysis and the activation of human heat-shock protein 90., Li J, Sun L, Xu C, Yu F, Zhou H, Zhao Y, Zhang J, Cai J, Mao C, Tang L, Xu Y, He J, Acta Biochim Biophys Sin (Shanghai). 2012 Apr;44(4):300-6. doi:, 10.1093/abbs/gms001. Epub 2012 Feb 7. PMID:22318716

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (3t10.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 3T10 CSU: Contacts of Structural Units for 3T10 Structure Factors (712 Kb) Retrieve 3T10 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3T10 from S2C, [Save to disk] Re-refined 3t10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T10 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3T10

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3T10, from MSDmotif at EBI Fold representative 3t10 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t10_A] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3T10 with the sequences similar proteins can be viewed for 3T10's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3T10

Community annotation for 3T10 at PDBWiki (http://pdbwiki.org)

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