3T1K Chaperone date Jul 22, 2011
title Hsp90 N-Terminal Domain Bound To Anp
authors J.Li
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A, B
Fragment: Unp Residues 9-236
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90a, Hsp90aa1, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.162 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.274 55.969 60.535 93.39 95.82 112.49
method X-Ray Diffractionresolution 1.50 Å
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (3t1k.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (3t1k.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3T1K
  • CSU: Contacts of Structural Units for 3T1K
  • Structure Factors (835 Kb)
  • Retrieve 3T1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T1K from S2C, [Save to disk]
  • Re-refined 3t1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T1K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T1K, from MSDmotif at EBI
  • Fold representative 3t1k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t1k] [3t1k_B] [3t1k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3T1K: [HATPase_c ] by SMART
  • Alignments of the sequence of 3T1K with the sequences similar proteins can be viewed for 3T1K's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3T1K
  • Community annotation for 3T1K at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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