3T1U Isomerase date Jul 22, 2011
title Crystal Structure Of The Complex Of Cyclophilin-A Enzyme Fro Azotobacter Vinelandii With Sucafpfpna Peptide
authors M.Karpusas, E.Christoforides, K.Bethanis, M.Dimou, P.Katinakis
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A
Synonym: Cyclophilin-A
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Azotobacter Vinelandii
Organism_taxid: 322710
Strain: Dj Atcc Baa-1303
Gene: Avin_23510
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Succinyl-Ala-Phe-Pro-Phe-P-Nitroanilide
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 42 21 2
R_factor 0.201 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.410 66.410 71.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand NIT, SIN enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene AVIN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a bacterial cytoplasmic cyclophilin A in complex with a tetrapeptide., Christoforides E, Dimou M, Katinakis P, Bethanis K, Karpusas M, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Mar 1;68(Pt 3):259-64., Epub 2012 Feb 15. PMID:22442217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3t1u.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3T1U
  • CSU: Contacts of Structural Units for 3T1U
  • Structure Factors (156 Kb)
  • Retrieve 3T1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T1U from S2C, [Save to disk]
  • Re-refined 3t1u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T1U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T1U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t1u] [3t1u_B] [3t1u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T1U
  • Community annotation for 3T1U at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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