3T3Z Oxidoreductase date Jul 25, 2011
title Human Cytochrome P450 2e1 In Complex With Pilocarpine
authors K.M.Meneely, N.M.Devore, E.E.Scott
compound source
Molecule: Cytochrome P450 2e1
Chain: A, B, C, D
Fragment: Unp Residues 31-492
Synonym: 4-Nitrophenol 2-Hydroxylase, Cypiie1, Cytochrome P
Ec: 1.14.13.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2e, Cyp2e1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk2e1dh
symmetry Space Group: P 41
R_factor 0.217 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.638 100.638 259.453 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 9PL, HEM, SUC enzyme Oxidoreductase E.C.1.14.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural comparison of cytochromes P450 2A6, 2A13, and 2E1 with pilocarpine., Devore NM, Meneely KM, Bart AG, Stephens ES, Battaile KP, Scott EE, FEBS J. 2011 Nov 3. doi: 10.1111/j.1742-4658.2011.08412.x. PMID:22051186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (3t3z.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3t3z.pdb2.gz) 85 Kb
  • Biological Unit Coordinates (3t3z.pdb3.gz) 84 Kb
  • Biological Unit Coordinates (3t3z.pdb4.gz) 84 Kb
  • Biological Unit Coordinates (3t3z.pdb5.gz) 163 Kb
  • Biological Unit Coordinates (3t3z.pdb6.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 3T3Z
  • CSU: Contacts of Structural Units for 3T3Z
  • Structure Factors (1538 Kb)
  • Retrieve 3T3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T3Z from S2C, [Save to disk]
  • Re-refined 3t3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T3Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T3Z, from MSDmotif at EBI
  • Fold representative 3t3z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t3z] [3t3z_C] [3t3z_D] [3t3z_B] [3t3z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3T3Z with the sequences similar proteins can be viewed for 3T3Z's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3T3Z
  • Community annotation for 3T3Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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