3T3Z Oxidoreductase date Jul 25, 2011
title Human Cytochrome P450 2e1 In Complex With Pilocarpine
authors K.M.Meneely, N.M.Devore, E.E.Scott
compound source
Molecule: Cytochrome P450 2e1
Chain: A, B, C, D
Fragment: Unp Residues 31-492
Synonym: 4-Nitrophenol 2-Hydroxylase, Cypiie1, Cytochrome P
Ec: 1.14.13.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2e, Cyp2e1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk2e1dh
symmetry Space Group: P 41
R_factor 0.217 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.638 100.638 259.453 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 9PL, HEM, SUC enzyme Oxidoreductase E.C.1.14.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural comparison of cytochromes P450 2A6, 2A13, and 2E1 with pilocarpine., Devore NM, Meneely KM, Bart AG, Stephens ES, Battaile KP, Scott EE, FEBS J. 2011 Nov 3. doi: 10.1111/j.1742-4658.2011.08412.x. PMID:22051186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (3t3z.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3t3z.pdb2.gz) 85 Kb
  • Biological Unit Coordinates (3t3z.pdb3.gz) 84 Kb
  • Biological Unit Coordinates (3t3z.pdb4.gz) 84 Kb
  • Biological Unit Coordinates (3t3z.pdb5.gz) 163 Kb
  • Biological Unit Coordinates (3t3z.pdb6.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 3T3Z
  • CSU: Contacts of Structural Units for 3T3Z
  • Structure Factors (1538 Kb)
  • Retrieve 3T3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T3Z from S2C, [Save to disk]
  • Re-refined 3t3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T3Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T3Z, from MSDmotif at EBI
  • Fold representative 3t3z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t3z] [3t3z_C] [3t3z_D] [3t3z_B] [3t3z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T3Z
  • Community annotation for 3T3Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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