3T4R	Viral Protein	date	Jul 26, 2011
title	Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Doma
authors	N.Martinez, N.Tarbouriech, M.Jamin
compound		source
Molecule: Phosphoprotein Chain: A Fragment: C-Terminal Domain Synonym: Protein P, Protein 4a Engineered: Yes		Organism_scientific: Lettuce Necrotic Yellows Virus Organism_common: Lnyv Organism_taxid: 928304 Strain: Isolate 318 Gene: P Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28a
symmetry	Space Group: P 41 2 2	R_factor 0.226 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.280 43.280 89.380 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MG, MSE	enzyme
Primary reference	Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein., Martinez N, Ribeiro EA Jr, Leyrat C, Tarbouriech N, Ruigrok RW, Jamin M, J Virol. 2013 Sep;87(17):9569-78. doi: 10.1128/JVI.00999-13. Epub 2013 Jun 19. PMID:23785215

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (3t4r.pdb1.gz) 26 Kb LPC: Ligand-Protein Contacts for 3T4R CSU: Contacts of Structural Units for 3T4R Structure Factors (85 Kb) Retrieve 3T4R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3T4R from S2C, [Save to disk] Re-refined 3t4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T4R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3T4R

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3T4R, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t4r_A] [3t4r] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3T4R

Community annotation for 3T4R at PDBWiki (http://pdbwiki.org)

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