3T5D Signaling Protein date Jul 27, 2011
title Crystal Structure Of Septin 7 In Complex With Gdp
authors E.Zent, A.Wittinghofer
compound source
Molecule: Septin-7
Chain: A, C
Synonym: Cdc10 Protein Homolog
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sept7, Cdc10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.285 R_Free 0.318
length a length b length c angle alpha angle beta angle gamma
82.363 82.363 210.598 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand GDP enzyme
A, C

Primary referenceStructural and biochemical properties of Sept7, a unique septin required for filament formation., Zent E, Vetter I, Wittinghofer A, Biol Chem. 2011 Aug;392(8-9):791-7. PMID:21824007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3t5d.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3T5D
  • CSU: Contacts of Structural Units for 3T5D
  • Structure Factors (93 Kb)
  • Retrieve 3T5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T5D from S2C, [Save to disk]
  • Re-refined 3t5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T5D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T5D, from MSDmotif at EBI
  • Fold representative 3t5d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t5d_A] [3t5d] [3t5d_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T5D
  • Community annotation for 3T5D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science