3T5I	Lipid Binding Protein	date	Jul 27, 2011
title	Structure Of Fully Modified Farnesylated Rheb Peptide In Com Pde6d
authors	S.A.Ismail, Y.X.Chen, A.Wittinghofer
compound		source
Molecule: Retinal Rod Rhodopsin-Sensitive Cgmp 3',5'-Cyclic Phosphodiesterase Subunit Delta; Chain: B, A, C, D Fragment: Full Length Pde Delta Synonym: Gmp-Pde Delta, Protein P17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pde6d, Pded Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: C-Terminal Farnesylated Rheb Peptide Csqqgkss(Cmt Chain: Q, R Fragment: C-Terminal Farnesylated Rheb Peptide Engineered: Yes		Synthetic: Yes Other_details: Peptide Synthesis , The Sequence Is The Cter Sequence Of Rheb
symmetry	Space Group: P 1 21 1	R_factor 0.189 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.750 70.050 71.230 90.00 81.55 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CMT, FAR	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B GTPase inhibitor activity
Primary reference	Arl2-GTP and Arl3-GTP regulate a GDI-like transport system for farnesylated cargo., Ismail SA, Chen YX, Rusinova A, Chandra A, Bierbaum M, Gremer L, Triola G, Waldmann H, Bastiaens PI, Wittinghofer A, Nat Chem Biol. 2011 Oct 16. doi: 10.1038/nchembio.686. PMID:22002721

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (3t5i.pdb1.gz) 28 Kb Biological Unit Coordinates (3t5i.pdb2.gz) 26 Kb Biological Unit Coordinates (3t5i.pdb3.gz) 28 Kb Biological Unit Coordinates (3t5i.pdb4.gz) 28 Kb LPC: Ligand-Protein Contacts for 3T5I CSU: Contacts of Structural Units for 3T5I Structure Factors (273 Kb) Retrieve 3T5I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3T5I from S2C, [Save to disk] Re-refined 3t5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T5I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3T5I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3T5I, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t5i_B] [3t5i] [3t5i_R] [3t5i_C] [3t5i_D] [3t5i_A] [3t5i_Q] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3T5I

Community annotation for 3T5I at PDBWiki (http://pdbwiki.org)

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