3T5N Viral Protein Rna date Jul 27, 2011
title 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In Compl Ssrna
authors K.M.Hastie, T.Liu, L.B.King, N.Ngo, M.A.Zandonatti, V.L.Woods, J.C Torre, E.O.Saphire
compound source
Molecule: Nucleoprotein
Chain: A
Fragment: N-Terminal Domain
Synonym: Nucleocapsid Protein
Engineered: Yes
Organism_scientific: Mopeia Lassa Reassortant 29
Organism_taxid: 300180
Gene: Np
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pet46

Molecule: Rna (5'-R(Pupapupcpupc)-3')
Chain: C
Other_details: H20

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.182 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.159 71.737 56.887 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand NI enzyme
Primary referenceCrystal structure of the Lassa virus nucleoprotein-RNA complex reveals a gating mechanism for RNA binding., Hastie KM, Liu T, Li S, King LB, Ngo N, Zandonatti MA, Woods VL Jr, de la Torre JC, Saphire EO, Proc Natl Acad Sci U S A. 2011 Nov 29;108(48):19365-70. Epub 2011 Nov 14. PMID:22084115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3t5n.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3T5N
  • CSU: Contacts of Structural Units for 3T5N
  • Structure Factors (273 Kb)
  • Retrieve 3T5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T5N from S2C, [Save to disk]
  • Re-refined 3t5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T5N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T5N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t5n] [3t5n_C] [3t5n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T5N
  • Community annotation for 3T5N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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