3T5O Immune System date Jul 27, 2011
title Crystal Structure Of Human Complement Component C6
authors A.E.Aleshin, B.Stec, L.A.Bankston, R.G.Discipio, R.C.Liddington
compound source
Molecule: Complement Component C6
Chain: A
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.222 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.810 180.150 60.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.87 Å
ligand BGC, CD, FUC, FUL, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Complement C6 suggests a mechanism for initiation and unidirectional, sequential assembly of the Membrane Attack Complex (MAC)., Aleshin AE, Schraufstatter IU, Stec B, Bankston LA, Liddington RC, Discipio RG, J Biol Chem. 2012 Jan 20. PMID:22267737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (3t5o.pdb1.gz) 296 Kb
  • LPC: Ligand-Protein Contacts for 3T5O
  • CSU: Contacts of Structural Units for 3T5O
  • Structure Factors (279 Kb)
  • Retrieve 3T5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T5O from S2C, [Save to disk]
  • Re-refined 3t5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3T5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3T5O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T5O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t5o_A] [3t5o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3T5O: [CCP] [FIMAC] [KAZAL] [LDLa] [MACPF] [TSP1 ] by SMART
    • Other resources with information on 3T5O
  • Community annotation for 3T5O at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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