3T5W Oxidoreductase date Jul 28, 2011
title 2me Modified Human Sod1
authors K.Ihara, Y.Yamaguchi, H.Torigoe, S.Wakatsuki, N.Taniguchi, K.Suzu N.Fujiwara
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B, D, E, F, G, H, I, J, K, L, M
Synonym: Copper Zinc Superoxide Dismutase, Superoxide Dismu Hsod1;
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.086 163.277 173.628 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CME, CU1, SO4, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, M, D, I, G, L
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceStructural switching of Cu,Zn-superoxide dismutases at loop VI: Insights from the crystal structure of beta-mercaptoethanol modified enzyme., Ihara K, Fujiwara N, Yamaguchi Y, Torigoe H, Wakatsuki S, Taniguchi N, Suzuki K, Biosci Rep. 2012 Jul 18. PMID:22804629
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (3t5w.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3t5w.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (3t5w.pdb3.gz) 54 Kb
  • Biological Unit Coordinates (3t5w.pdb4.gz) 52 Kb
  • Biological Unit Coordinates (3t5w.pdb5.gz) 53 Kb
  • Biological Unit Coordinates (3t5w.pdb6.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3T5W
  • CSU: Contacts of Structural Units for 3T5W
  • Structure Factors (2834 Kb)
  • Retrieve 3T5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T5W from S2C, [Save to disk]
  • Re-refined 3t5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T5W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T5W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t5w_H] [3t5w_I] [3t5w] [3t5w_A] [3t5w_J] [3t5w_G] [3t5w_M] [3t5w_K] [3t5w_F] [3t5w_B] [3t5w_L] [3t5w_E] [3t5w_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T5W
  • Community annotation for 3T5W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science