3T79 Ndc10: a platform for inner kinetochore assembly in budding yeast date 2011-07-29
authors Cho, U.S., Harrison, S.C.
compound source
R_Free 0.3309
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.61
Primary referenceNdc10 is a platform for inner kinetochore assembly in budding yeast., Cho US, Harrison SC, Nat Struct Mol Biol. 2011 Dec 4. doi: 10.1038/nsmb.2178. PMID:22139014
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (3t79.pdb1.gz) 298 Kb
  • Biological Unit Coordinates (3t79.pdb2.gz) 150 Kb
  • Biological Unit Coordinates (3t79.pdb3.gz) 150 Kb
  • CSU: Contacts of Structural Units for 3T79
  • Structure Factors (391 Kb)
  • Retrieve 3T79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T79 from S2C, [Save to disk]
  • Re-refined 3t79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T79, from MSDmotif at EBI
  • Fold representative 3t79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t79_B] [3t79_D] [3t79_C] [3t79_F] [3t79_E] [3t79_A] [3t79]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T79
  • Community annotation for 3T79 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science