3T79 Dna Binding Protein Dna date Jul 29, 2011
title Ndc10: A Platform For Inner Kinetochore Assembly In Budding
authors U.S.Cho, S.C.Harrison
compound source
Molecule: Dna (5'-D(Ptptpapaptptptpaptpapapapa 3');
Chain: B
Engineered: Yes
Other_details: Centromeric Cdeiii Dna
Synthetic: Yes
Other_details: Synthesized Dna

Molecule: Dna (5'-D(Papapaptptptptpaptpapapapt 3');
Chain: C
Engineered: Yes
Other_details: Centromeric Cdeiii Dna

Synthetic: Yes
Other_details: Synthesized Dna

Molecule: Dna (5'-D(Ptpapaptptptpaptpapapapapt
Chain: E
Engineered: Yes
Other_details: Centromeric Cdeiii Dna

Synthetic: Yes
Other_details: Synthesized Dna

Molecule: Dna (5'-D(Papapapapaptptptptpaptpapa 3');
Chain: F
Engineered: Yes
Other_details: Centromeric Cdeiii Dna

Synthetic: Yes
Other_details: Synthesized Dna

Molecule: Klla0e03807p
Chain: A, D
Fragment: Dna Binding Domain (Residues 1-402)
Engineered: Yes

Organism_scientific: Kluyveromyces Lactis
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0e03807g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 21 21 21
R_factor 0.286 R_Free 0.331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.060 99.651 125.915 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.61 Å
Primary referenceNdc10 is a platform for inner kinetochore assembly in budding yeast., Cho US, Harrison SC, Nat Struct Mol Biol. 2011 Dec 4. doi: 10.1038/nsmb.2178. PMID:22139014
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (3t79.pdb1.gz) 298 Kb
  • Biological Unit Coordinates (3t79.pdb2.gz) 150 Kb
  • Biological Unit Coordinates (3t79.pdb3.gz) 150 Kb
  • CSU: Contacts of Structural Units for 3T79
  • Structure Factors (391 Kb)
  • Retrieve 3T79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T79 from S2C, [Save to disk]
  • Re-refined 3t79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T79, from MSDmotif at EBI
  • Fold representative 3t79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t79_B] [3t79_D] [3t79_C] [3t79_F] [3t79_E] [3t79_A] [3t79]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T79
  • Community annotation for 3T79 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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