3T7N Transferase date Jul 30, 2011
title Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed Wit Manganese And Udp, In A Monoclinic Closed Form
authors A.Chaikuad, D.S.Froese, E.Krysztofinska, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, U.Oppermann, W.W.Yue, St Genomics Consortium (Sgc)
compound source
Molecule: Glycogenin-1
Chain: A, B
Fragment: Glycogenin (Unp Residues 1-262)
Synonym: Gn-1, Gn1
Ec: 2.4.1.186
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gyg, Gyg1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.020 80.720 69.850 90.00 100.92 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand MN, UDP enzyme Transferase E.C.2.4.1.186 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational plasticity of glycogenin and its maltosaccharide substrate during glycogen biogenesis., Chaikuad A, Froese DS, Berridge G, von Delft F, Oppermann U, Yue WW, Proc Natl Acad Sci U S A. 2011 Dec 12. PMID:22160680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (3t7n.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 3T7N
  • CSU: Contacts of Structural Units for 3T7N
  • Structure Factors (525 Kb)
  • Retrieve 3T7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T7N from S2C, [Save to disk]
  • Re-refined 3t7n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T7N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T7N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t7n] [3t7n_A] [3t7n_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T7N
  • Community annotation for 3T7N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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