3TB5 Hydrolase date Aug 05, 2011
title Crystal Structure Of The Enterococcus Faecalis Methionine Aminopeptidase Apo Form
authors C.Kishor, R.Gumpena, R.Reddi, A.Addlagatta
compound source
Molecule: Methionine Aminopeptidase
Chain: A, B, C
Ec: 3.4.11.18
Engineered: Yes
Organism_scientific: Enterococcus Faecalis
Organism_taxid: 565646
Strain: Hip11704
Gene: Efhg_00941, Metap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.740 132.130 85.300 90.00 133.36 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CIT enzyme Hydrolase E.C.3.4.11.18 BRENDA
Gene EFHG
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (3tb5.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3tb5.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (3tb5.pdb3.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3TB5
  • CSU: Contacts of Structural Units for 3TB5
  • Structure Factors (655 Kb)
  • Retrieve 3TB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TB5 from S2C, [Save to disk]
  • Re-refined 3tb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TB5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TB5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tb5_C] [3tb5_A] [3tb5] [3tb5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TB5
  • Community annotation for 3TB5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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