3TB7 Hydrolase date Aug 05, 2011
title The Type I Crystal Structure Of Streptococcus Agalactiae Sor
authors B.Khare
compound source
Molecule: Sortase Family Protein
Chain: A
Fragment: Unp Residues 43-260
Synonym: Sortase C1, Pilus-Specific Sortase
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Streptococcus Agalactiae Serogroup V
Organism_taxid: 216466
Strain: Sag 2603vr
Gene: Sag0647
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.590 46.930 66.570 90.00 114.99 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Primary referenceThe Crystal Structure Analysis of Group B Streptococcus Sortase C1: A Model for the "Lid" Movement upon Substrate Binding., Khare B, Fu ZQ, Huang IH, Ton-That H, Narayana SV, J Mol Biol. 2011 Oct 18. PMID:22033482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3tb7.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 3TB7
  • Structure Factors (399 Kb)
  • Retrieve 3TB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TB7 from S2C, [Save to disk]
  • Re-refined 3tb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TB7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TB7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tb7] [3tb7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TB7
  • Community annotation for 3TB7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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