3TDL Transport Protein date Aug 11, 2011
title Structure Of Human Serum Albumin In Complex With Dauda
authors Y.Wang, Z.Luo, X.Shi, H.Wang, L.Nie
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb, Gig20, Gig42, Pro0903, Pro1708, Pro2044, Pro2619 Pro2675, Unq696pro1341;
Expression_system: Pichia Pastoris
Expression_system_common: Yeast
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.251 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
176.657 37.137 90.195 90.00 104.38 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 11D, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • antioxidant activity


  • Primary referenceA fluorescent fatty acid probe, DAUDA, selectively displaces two myristates bound in human serum albumin., Wang Y, Luo Z, Shi X, Wang H, Nie L, Huang M, Protein Sci. 2011 Dec;20(12):2095-101. doi: 10.1002/pro.749. Epub 2011 Nov 9. PMID:21997768
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3tdl.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3TDL
  • CSU: Contacts of Structural Units for 3TDL
  • Structure Factors (255 Kb)
  • Retrieve 3TDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TDL from S2C, [Save to disk]
  • Re-refined 3tdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TDL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TDL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tdl_A] [3tdl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TDL: [ALBUMIN ] by SMART
  • Other resources with information on 3TDL
  • Community annotation for 3TDL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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