3TEG Ligase date Aug 14, 2011
title Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases Catal Misaminoacylation Of Trnaphe With 3,4-Dihydroxy-L-Phenylala Dopa)
authors N.Moor, L.Klipcan, M.Safro
compound source
Molecule: Phenylalanyl-Trna Synthetase, Mitochondrial
Chain: A
Synonym: Phenylalanine--Trna Ligase, Phers
Ec: 6.1.1.20
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fars1, Fars2, Hspc320
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.185 90.587 96.076 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand DAH enzyme Ligase E.C.6.1.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBacterial and Eukaryotic Phenylalanyl-tRNA Synthetases Catalyze Misaminoacylation of tRNA(Phe) with 3,4-Dihydroxy-L-Phenylalanine., Moor N, Klipcan L, Safro MG, Chem Biol. 2011 Oct 28;18(10):1221-9. PMID:22035791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (3teg.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3TEG
  • CSU: Contacts of Structural Units for 3TEG
  • Structure Factors (602 Kb)
  • Retrieve 3TEG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TEG from S2C, [Save to disk]
  • Re-refined 3teg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TEG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TEG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TEG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3teg_A] [3teg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TEG: [FDX-ACB ] by SMART
  • Other resources with information on 3TEG
  • Community annotation for 3TEG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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