3TEI Transferase date Aug 15, 2011
title Crystal Structure Of Human Erk2 Complexed With A Mapk Dockin
authors G.Gogl, A.Remenyi
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Map Kinase 1, Mapk 1, Ert1, Extracellular Signal-R Kinase 2, Erk-2, Map Kinase Isoform P42, P42-Mapk, Mitogen- Protein Kinase 2, Map Kinase 2, Mapk 2;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk1, Erk2, Prkm1, Prkm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Ribosomal Protein S6 Kinase Alpha-1
Chain: B
Fragment: C-Terminal Docking Peptide, Residues 712-735
Synonym: S6k-Alpha-1, 90 Kda Ribosomal Protein S6 Kinase 1, 1, P90rsk1, P90s6k, Map Kinase-Activated Protein Kinase 1a, Activated Protein Kinase 1a, Mapkap Kinase 1a, Mapkapk-1a, S6 Kinase 1, Rsk-1;
Ec: 2.7.11.1
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.700 58.980 155.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ANP enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary referenceSpecificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove., Garai A, Zeke A, Gogl G, Toro I, Fordos F, Blankenburg H, Barkai T, Varga J, Alexa A, Emig D, Albrecht M, Remenyi A, Sci Signal. 2012 Oct 9;5(245):ra74. doi: 10.1126/scisignal.2003004. PMID:23047924
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (3tei.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 3TEI
  • CSU: Contacts of Structural Units for 3TEI
  • Structure Factors (255 Kb)
  • Retrieve 3TEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TEI from S2C, [Save to disk]
  • Re-refined 3tei structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TEI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TEI, from MSDmotif at EBI
  • Fold representative 3tei from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tei_B] [3tei_A] [3tei]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TEI: [S_TKc ] by SMART
  • Other resources with information on 3TEI
  • Community annotation for 3TEI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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