3TFO Oxidoreductase date Aug 16, 2011
title Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Prot Reductase From Sinorhizobium Meliloti
authors R.Agarwal, S.Chamala, B.Evans, R.Foti, A.Gizzi, B.Hillerich, A.Kar J.Lafleur, R.Seidel, G.Villigas, W.Zencheck, S.C.Almo, S.Swamina York Structural Genomics Research Consortium (Nysgrc)
compound source
Molecule: Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reducta
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Sinorhizobium Meliloti
Organism_common: Ensifer Meliloti
Organism_taxid: 266834
Strain: 1021
Gene: Ra1268, Sma2343
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 31 2 1
R_factor 0.176 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.551 108.551 207.314 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.08 Å
ligand HEZ, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3tfo.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 3TFO
  • CSU: Contacts of Structural Units for 3TFO
  • Structure Factors (1249 Kb)
  • Retrieve 3TFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TFO from S2C, [Save to disk]
  • Re-refined 3tfo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TFO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TFO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tfo_C] [3tfo] [3tfo_B] [3tfo_D] [3tfo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3TFO
  • Community annotation for 3TFO at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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