3TG1 Transferase Hydrolase date Aug 17, 2011
title Crystal Structure Of P38alpha In Complex With A Mapk Docking
authors Y.Y.Zhang, J.W.Wu, Z.X.Wang
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Crk1, Mitogen-Activated Pr Kinase P38 Alpha, Map Kinase P38 Alpha;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Mapk14, Crk1, Csbp1, Csbp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Dual Specificity Protein Phosphatase 10
Chain: B
Fragment: Kbd (Unp Residues 139-288)
Synonym: Mitogen-Activated Protein Kinase Phosphatase 5, Ma Phosphatase 5, Mkp-5;
Ec: 3.1.3.16, 3.1.3.48
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dusp10, Mkp5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21b
symmetry Space Group: P 41 21 2
R_factor 0.216 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.428 72.428 226.143 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Distinct Interaction Mode Revealed by the Crystal Structure of the Kinase p38alpha with the MAPK Binding Domain of the Phosphatase MKP5., Zhang YY, Wu JW, Wang ZX, Sci Signal. 2011 Dec 20;4(204):ra88. PMID:22375048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (3tg1.pdb1.gz) 158 Kb
  • CSU: Contacts of Structural Units for 3TG1
  • Structure Factors (269 Kb)
  • Retrieve 3TG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TG1 from S2C, [Save to disk]
  • Re-refined 3tg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TG1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TG1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tg1_A] [3tg1_B] [3tg1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3TG1: [RHOD] [S_TKc ] by SMART
  • Other resources with information on 3TG1
  • Community annotation for 3TG1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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