3TG4 Transferase date Aug 17, 2011
title Structure Of Smyd2 In Complex With Sam
authors K.Zhao, L.Wang
compound source
Molecule: N-Lysine Methyltransferase Smyd2
Chain: A
Synonym: Hskm-B, Histone Methyltransferase Smyd2, Lysine N- Methyltransferase 3c, Set And Mynd Domain-Containing Protei
Ec: 2.1.1.-, 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smyd2, Kmt3c
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.480 67.480 141.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, SAM, ZN enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone methyltransferase ac...


  • Primary referenceStructure of human SMYD2 reveals the basis of p53 tumor suppressor methylation., Wang L, Li L, Zhang H, Luo X, Dai J, Zhou S, Gu J, Zhu J, Atadja P, Lu C, Li E, Zhao K, J Biol Chem. 2011 Aug 31. PMID:21880715
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (3tg4.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 3TG4
  • CSU: Contacts of Structural Units for 3TG4
  • Structure Factors (1900 Kb)
  • Retrieve 3TG4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TG4 from S2C, [Save to disk]
  • Re-refined 3tg4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TG4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TG4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TG4, from MSDmotif at EBI
  • Fold representative 3tg4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tg4_A] [3tg4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TG4: [SET ] by SMART
  • Other resources with information on 3TG4
  • Community annotation for 3TG4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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