3TJE Immune System date Aug 24, 2011
title Crystal Structure Of Fas Receptor Extracellular Domain In Co Fab E09
authors S.Zuger, C.Stirnimann, C.Briand, M.G.Grutter
compound source
Molecule: Fab E09, Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: Hek Ebna-293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu4.4

Molecule: Fab E09, Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: Hek Ebna-293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu15.1

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: F
Synonym: Apo-1 Antigen, Apoptosis-Mediating Surface Antigen Faslg Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apt1, Fas, Fas1, Tnfrsf6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.490 166.400 110.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand CD, CL, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceA series of Fas receptor agonist antibodies that demonstrate an inverse correlation between affinity and potency., Chodorge M, Zuger S, Stirnimann C, Briand C, Jermutus L, Grutter MG, Minter RR, Cell Death Differ. 2012 Jan 20. doi: 10.1038/cdd.2011.208. PMID:22261618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (3tje.pdb1.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 3TJE
  • CSU: Contacts of Structural Units for 3TJE
  • Structure Factors (470 Kb)
  • Retrieve 3TJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TJE from S2C, [Save to disk]
  • Re-refined 3tje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TJE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TJE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tje] [3tje_H] [3tje_L] [3tje_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3TJE: [IG_like] [IGv] [TNFR ] by SMART
  • Other resources with information on 3TJE
  • Community annotation for 3TJE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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