3TL0 Hydrolase Peptide date Aug 29, 2011
title Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr P
authors Y.Zhang, J.Zhang, C.Yuan, R.L.Hard, I.H.Park, C.Li, C.E.Bell, D.Pei
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 11
Chain: A
Fragment: N-Terminal Sh2 Domain, (Unp Residues 1-106)
Synonym: Protein-Tyrosine Phosphatase 1d, Ptp-1d, Protein-T Phosphatase 2c, Ptp-2c, Sh-Ptp2, Shp-2, Shp2, Sh-Ptp3;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn11, Ptp2c, Shptp2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Rlnpyaqlwhr Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Was Synthesized With Standard Fmoc.H Chemistry
symmetry Space Group: P 43 21 2
R_factor 0.193 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.749 62.749 75.323 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand PTR, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceSimultaneous binding of two peptidyl ligands by a SRC homology 2 domain., Zhang Y, Zhang J, Yuan C, Hard RL, Park IH, Li C, Bell C, Pei D, Biochemistry. 2011 Sep 6;50(35):7637-46. Epub 2011 Aug 9. PMID:21800896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3tl0.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3TL0
  • CSU: Contacts of Structural Units for 3TL0
  • Structure Factors (69 Kb)
  • Retrieve 3TL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TL0 from S2C, [Save to disk]
  • Re-refined 3tl0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TL0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TL0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TL0, from MSDmotif at EBI
  • Fold representative 3tl0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tl0] [3tl0_A] [3tl0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3TL0 with the sequences similar proteins can be viewed for 3TL0's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3TL0
  • Community annotation for 3TL0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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