OCA Atlas for 3TMP

3TMP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GLZ, SEP

enzyme

note

3TMP is a representative structure

Gene
Ontology

Chain	Function	Process	Component
E, C, G, A

Primary reference

Phosphorylation-dependent activity of the deubiquitinase DUBA., Huang OW, Ma X, Yin J, Flinders J, Maurer T, Kayagaki N, Phung Q, Bosanac I, Arnott D, Dixit VM, Hymowitz SG, Starovasnik MA, Cochran AG, Nat Struct Mol Biol. 2012 Jan 15;19(2):171-5. doi: 10.1038/nsmb.2206. PMID:22245969

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]

Biological Unit Coordinates (3tmp.pdb1.gz) 45 Kb

Biological Unit Coordinates (3tmp.pdb2.gz) 45 Kb

Biological Unit Coordinates (3tmp.pdb3.gz) 46 Kb

Biological Unit Coordinates (3tmp.pdb4.gz) 44 Kb

LPC: Ligand-Protein Contacts for 3TMP

CSU: Contacts of Structural Units for 3TMP

Structure Factors (993 Kb)

Retrieve 3TMP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3TMP from S2C, [Save to disk]

Re-refined 3tmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TMP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tmp] [3tmp_A] [3tmp_B] [3tmp_C] [3tmp_D] [3tmp_E] [3tmp_F] [3tmp_G] [3tmp_H]

SWISS-PROT database:

Domain found in 3TMP: [UBQ ] by SMART

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