3TS4 Hydrolase Hydrolase Inhibitor date Sep 12, 2011
title Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
authors E.A.Stura, V.Dive, L.Devel, B.Czarny, F.Beau, L.Vera
compound source
Molecule: Macrophage Metalloelastase
Chain: A
Fragment: Catalitic Subunit (Unp Residues 106-263)
Synonym: Mme, Macrophage Elastase, Me, Hme, Matrix Metallop 12, Mmp-12;
Ec: 3.4.24.65
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hme, Mmp12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Pet24a
symmetry Space Group: P 21 21 2
R_factor 0.178 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.090 63.650 37.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand CA, EEG, GOL, IMD, ZN enzyme Hydrolase E.C.3.4.24.65 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSimple pseudo-dipeptides with a P2' glutamate: a novel inhibitor family of matrix metalloproteases and other metzincins., Devel L, Beau F, Amoura M, Vera L, Cassar-Lajeunesse E, Garcia S, Czarny B, Stura EA, Dive V, J Biol Chem. 2012 Aug 3;287(32):26647-56. Epub 2012 Jun 11. PMID:22689580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3ts4.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3TS4
  • CSU: Contacts of Structural Units for 3TS4
  • Structure Factors (409 Kb)
  • Retrieve 3TS4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TS4 from S2C, [Save to disk]
  • Re-refined 3ts4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TS4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TS4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TS4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ts4] [3ts4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TS4: [ZnMc ] by SMART
  • Other resources with information on 3TS4
  • Community annotation for 3TS4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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