3TS7 Transferase date Sep 12, 2011
title Crystal Structure Of Farnesyl Diphosphate Synthase (Target E From Methylococcus Capsulatus
authors Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washin A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H C.D.Poulter, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (
compound source
Molecule: Geranyltranstransferase
Chain: A, B
Ec: 2.5.1.10
Engineered: Yes
Organism_scientific: Methylococcus Capsulatus
Organism_taxid: 414
Gene: Ispa, Mca0818
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 42 21 2
R_factor 0.219 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.592 114.592 113.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand PO4 enzyme Transferase E.C.2.5.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePrediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily., Wallrapp FH, Pan JJ, Ramamoorthy G, Almonacid DE, Hillerich BS, Seidel R, Patskovsky Y, Babbitt PC, Almo SC, Jacobson MP, Poulter CD, Proc Natl Acad Sci U S A. 2013 Mar 14. PMID:23493556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3ts7.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3TS7
  • CSU: Contacts of Structural Units for 3TS7
  • Structure Factors (415 Kb)
  • Retrieve 3TS7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TS7 from S2C, [Save to disk]
  • Re-refined 3ts7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TS7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TS7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TS7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ts7_A] [3ts7] [3ts7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TS7
  • Community annotation for 3TS7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science