3TSI Viral Protein date Sep 13, 2011
title Structure Of The Parainfluenza Virus 5 (Piv5) Hemagglutinin- Neuraminidase (Hn) Stalk Domain
authors S.Bose, B.D.Welch, C.A.Kors, P.Yuan, T.S.Jardetzky, R.A.Lamb
compound source
Molecule: Hemagglutinin-Neuraminidase
Chain: A, B, C, D
Fragment: Stalk Domain
Ec: 3.2.1.18
Engineered: Yes
Organism_scientific: Simian Virus 5
Organism_common: Sv5
Organism_taxid: 11208
Strain: W3
Gene: Hn
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbacgus-3
symmetry Space Group: P 32 2 1
R_factor 0.202 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.276 101.276 85.713 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand
enzyme Hydrolase E.C.3.2.1.18 BRENDA
Primary referenceStructure and mutagenesis of the parainfluenza virus 5 hemagglutinin-neuraminidase stalk domain reveals a four-helix bundle and the role of the stalk in fusion promotion., Bose S, Welch BD, Kors CA, Yuan P, Jardetzky TS, Lamb RA, J Virol. 2011 Oct 12. PMID:21994464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3tsi.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 3TSI
  • Structure Factors (315 Kb)
  • Retrieve 3TSI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TSI from S2C, [Save to disk]
  • Re-refined 3tsi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TSI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TSI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tsi_B] [3tsi_A] [3tsi] [3tsi_C] [3tsi_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TSI
  • Community annotation for 3TSI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science