3TT9 Cell Adhesion date Sep 14, 2011
title Crystal Structure Of The Stable Degradation Fragment Of Huma Plakophilin 2 Isoform A (Pkp2a) C752r Variant
authors A.Schuetz, Y.Roske, B.Gerull, U.Heinemann
compound source
Molecule: Plakophilin-2
Chain: A
Fragment: Arm Domains 1, 2, And 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqlinkh
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.350 63.038 74.953 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand GOL enzyme
Primary referenceMolecular Insights into Arrhythmogenic Right Ventricular Cardiomyopathy Caused by Plakophilin-2 Missense Mutations., Kirchner F, Schuetz A, Boldt LH, Martens K, Dittmar G, Haverkamp W, Thierfelder L, Heinemann U, Gerull B, Circ Cardiovasc Genet. 2012 Jul 9. PMID:22781308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3tt9.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3TT9
  • CSU: Contacts of Structural Units for 3TT9
  • Structure Factors (241 Kb)
  • Retrieve 3TT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TT9 from S2C, [Save to disk]
  • Re-refined 3tt9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TT9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TT9, from MSDmotif at EBI
  • Fold representative 3tt9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tt9_A] [3tt9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TT9: [ARM ] by SMART
  • Other resources with information on 3TT9
  • Community annotation for 3TT9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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