3TTW Oxidoreductase date Sep 15, 2011
title Structure Of The F413e Variant Of E. Coli Kate
authors P.C.Loewen, V.Jha
compound source
Molecule: Catalase Hpii
Chain: A, B, C, D
Synonym: Catalase Kate, Hydroxyperoxidase II
Ec: 1.11.1.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: B1732, Jw1721, Kate
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Um255
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pks
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.490 132.850 122.680 90.00 109.36 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand HEM, OCS enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • catalase activity
  • peroxidase activity


  • Primary referenceMutation of Phe413 to Tyr in catalase KatE from Escherichia coli leads to side chain damage and main chain cleavage., Jha V, Donald LJ, Loewen PC, Arch Biochem Biophys. 2012 Sep 15;525(2):207-14. doi: 10.1016/j.abb.2011.11.022. , Epub 2011 Dec 8. PMID:22172685
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (984 Kb) [Save to disk]
  • Biological Unit Coordinates (3ttw.pdb1.gz) 975 Kb
  • LPC: Ligand-Protein Contacts for 3TTW
  • CSU: Contacts of Structural Units for 3TTW
  • Structure Factors (4851 Kb)
  • Retrieve 3TTW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TTW from S2C, [Save to disk]
  • Re-refined 3ttw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TTW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TTW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TTW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ttw_A] [3ttw_C] [3ttw_D] [3ttw_B] [3ttw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TTW: [Catalase ] by SMART
  • Other resources with information on 3TTW
  • Community annotation for 3TTW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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