3TZM Transferase Transferase Inhibitor date Sep 27, 2011
title Tgf-Beta Receptor Type 1 In Complex With Sb431542
authors A.A.Ogunjimi, E.Zeqiraj, D.F.Ceccarelli, F.Sicheri
compound source
Molecule: Tgf-Beta Receptor Type-1
Chain: A
Fragment: Kinase Domain, Unp Residues 200-503
Synonym: Tgfr-1, Activin A Receptor Type II-Like Protein Ki 53kd, Activin Receptor-Like Kinase 5, Alk-5, Alk5, Serinet Protein Kinase Receptor R4, Skr4, Tgf-Beta Type I Receptor, Transforming Growth Factor-Beta Receptor Type I, Tgf-Beta R Type I, Tbetar-I;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbr1, Alk5, Skr4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.771 77.726 90.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 085 enzyme Transferase E.C.2.7.11.30 BRENDA
Primary referenceStructural basis for specificity of TGFbeta family receptor small molecule inhibitors., Ogunjimi AA, Zeqiraj E, Ceccarelli DF, Sicheri F, Wrana JL, David L, Cell Signal. 2012 Feb;24(2):476-83. Epub 2011 Oct 1. PMID:21983015
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3tzm.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3TZM
  • CSU: Contacts of Structural Units for 3TZM
  • Structure Factors (482 Kb)
  • Retrieve 3TZM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TZM from S2C, [Save to disk]
  • Re-refined 3tzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TZM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TZM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TZM, from MSDmotif at EBI
  • Fold representative 3tzm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tzm] [3tzm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TZM
  • Community annotation for 3TZM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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