3TZM Transferase Transferase Inhibitor date Sep 27, 2011
title Tgf-Beta Receptor Type 1 In Complex With Sb431542
authors A.A.Ogunjimi, E.Zeqiraj, D.F.Ceccarelli, F.Sicheri
compound source
Molecule: Tgf-Beta Receptor Type-1
Chain: A
Fragment: Kinase Domain, Unp Residues 200-503
Synonym: Tgfr-1, Activin A Receptor Type II-Like Protein Ki 53kd, Activin Receptor-Like Kinase 5, Alk-5, Alk5, Serinet Protein Kinase Receptor R4, Skr4, Tgf-Beta Type I Receptor, Transforming Growth Factor-Beta Receptor Type I, Tgf-Beta R Type I, Tbetar-I;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbr1, Alk5, Skr4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.771 77.726 90.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 085 enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for specificity of TGFbeta family receptor small molecule inhibitors., Ogunjimi AA, Zeqiraj E, Ceccarelli DF, Sicheri F, Wrana JL, David L, Cell Signal. 2012 Feb;24(2):476-83. Epub 2011 Oct 1. PMID:21983015
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3tzm.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3TZM
  • CSU: Contacts of Structural Units for 3TZM
  • Structure Factors (482 Kb)
  • Retrieve 3TZM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TZM from S2C, [Save to disk]
  • Re-refined 3tzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TZM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TZM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TZM, from MSDmotif at EBI
  • Fold representative 3tzm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tzm] [3tzm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TZM
  • Community annotation for 3TZM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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