3U0N Fluorescent Protein date Sep 28, 2011
title Crystal Structure Of The Engineered Fluorescent Protein Mrub Form 2
authors J.Akerboom, L.L.Looger, E.R.Schreiter
compound source
Molecule: Mruby
Chain: A
Synonym: Gfp-Like Chromoprotein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Entacmaea Quadricolor
Organism_common: Bubble-Tip Anemone
Organism_taxid: 6118
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.154 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.269 82.523 88.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand NRQ, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGenetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics., Akerboom J, Carreras Calderon N, Tian L, Wabnig S, Prigge M, Tolo J, Gordus A, Orger MB, Severi KE, Macklin JJ, Patel R, Pulver SR, Wardill TJ, Fischer E, Schuler C, Chen TW, Sarkisyan KS, Marvin JS, Bargmann CI, Kim DS, Kugler S, Lagnado L, Hegemann P, Gottschalk A, Schreiter ER, Looger LL, Front Mol Neurosci. 2013;6:2. doi: 10.3389/fnmol.2013.00002. Epub 2013 Mar 4. PMID:23459413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3u0n.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3U0N
  • CSU: Contacts of Structural Units for 3U0N
  • Structure Factors (1701 Kb)
  • Retrieve 3U0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U0N from S2C, [Save to disk]
  • Re-refined 3u0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3U0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U0N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U0N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u0n] [3u0n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3U0N
  • Community annotation for 3U0N at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science