3U1J Hydrolase Hydrolase Inhibitor date Sep 30, 2011
title Aprotinin Bound To Dengue Virus Protease
authors C.G.Noble
compound source
Molecule: Serine Protease Subunit Ns2b
Chain: A
Fragment: Unp Residues 1393-1438
Synonym: Flavivirin Protease Ns2b Regulatory Subunit, Non-S Protein 2b;
Engineered: Yes
Organism_scientific: Dengue Virus 3
Organism_common: Denv-3
Organism_taxid: 408693
Strain: Singapore81201995
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1

Molecule: Serine Protease Ns3
Chain: B
Fragment: Unp Residues 1474-1655
Synonym: Flavivirin Protease Ns3 Catalytic Subunit, Non-Str Protein 3;
Ec: 3.4.21.91, 3.6.1.15, 3.6.4.13
Engineered: Yes

Organism_scientific: Dengue Virus 3
Organism_common: Denv-3
Organism_taxid: 408693
Strain: Singapore81201995
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1

Molecule: Pancreatic Trypsin Inhibitor
Chain: E
Fragment: Unp Residues 36-93
Synonym: Aprotinin, Basic Protease Inhibitor, Bpi, Bpti

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 3 2 1
R_factor 0.186 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.789 84.789 66.031 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Hydrolase E.C.3.4.21.91 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


Primary referenceLigand-bound structures of the dengue virus protease reveal the active conformation., Noble CG, Seh CC, Chao AT, Shi PY, J Virol. 2011 Oct 26. PMID:22031935
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3u1j.pdb1.gz) 84 Kb
  • CSU: Contacts of Structural Units for 3U1J
  • Structure Factors (368 Kb)
  • Retrieve 3U1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U1J from S2C, [Save to disk]
  • Re-refined 3u1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U1J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u1j_E] [3u1j_B] [3u1j_A] [3u1j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3U1J: [KU ] by SMART
  • Other resources with information on 3U1J
  • Community annotation for 3U1J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science